Starting pypedal.py at Mon Apr 19 15:28:53 2004 Preprocessing pedigree at Mon Apr 19 15:28:53 2004 Calling set_ancestor_flag at Mon Apr 19 15:28:53 2004 Collecting pedigree metadata at Mon Apr 19 15:28:53 2004 PEDIGREE example_meta (example.ped) Records: 15 Unique Sires: 9 Unique Dams: 7 Unique Gens: 1 Unique Years: 1 Unique Founders: 3 Pedigree Code: asd Calling inbreeding() at Mon Apr 19 15:28:53 2004 {1: 0.0, 2: 0.0, 3: 0.0, 4: 0.0, 5: 0.0, 6: 0.0, 7: 0.0, 8: 0.0, 9: 0.0, 10: 0.0, 11: 0.0, 12: 0.015625, 13: 0.078125, 14: 0.015625, 15: 0.14453125} Calling a_effective_founders_lacy() at Mon Apr 19 15:28:53 2004 ============================================================ animals: 15 founders: 3 descendants: 12 f_e: 7.205 ============================================================ Calling a_effective_founders_boichard() at Mon Apr 19 15:28:53 2004 ============================================================ animals: 15 founders: 3 descendants: 12 f_e: 5.856 ============================================================ Calling a_effective_ancestors_definite() at Mon Apr 19 15:28:53 2004 ============================================================ animals: 15 founders: 0 descendants: 15 f_a: 0.000 ============================================================ Calling a_effective_ancestors_indefinite() at Mon Apr 19 15:28:53 2004 ------------------------------------------------------------ WARNING: (pyp_metrics/a_effective_ancestors_indefinite()): Setting n (10) to be equal to the actual number of founders (0) in the pedigree! ============================================================ animals: 15 founders: 0 descendants: 15 f_l: 0.000 f_u: 1.000 ============================================================ Calling related_animals() at Mon Apr 19 15:28:53 2004 [15, 13, 7, 3, 4, 1, 2, 12, 9, 6, 11, 8, 5, 14, 10] Calling related_animals() at Mon Apr 19 15:28:53 2004 [10, 7, 3, 4, 1, 2] Calling common_ancestors() at Mon Apr 19 15:28:53 2004 [1, 2, 3, 4, 7, 10] Stopping pypedal.py at Mon Apr 19 15:28:53 2004