4.2.3 Reading PyPedal Output

Starting pypedal.py at Mon Apr 19 15:28:53 2004
        Preprocessing pedigree at Mon Apr 19 15:28:53 2004
        Calling set_ancestor_flag at Mon Apr 19 15:28:53 2004
        Collecting pedigree metadata at Mon Apr 19 15:28:53 2004
PEDIGREE example_meta (example.ped)
        Records:                15
        Unique Sires:           9
        Unique Dams:            7
        Unique Gens:            1
        Unique Years:           1
        Unique Founders:        3
        Pedigree Code:          asd
        Calling inbreeding() at Mon Apr 19 15:28:53 2004
{1: 0.0, 2: 0.0, 3: 0.0, 4: 0.0, 5: 0.0, 6: 0.0, 7: 0.0, 8: 0.0, 9: 0.0, 10: 0.0, 11: 0.0, 12: 0.015625, 13: 0.078125, 14: 0.015625, 15: 0.14453125}
        Calling a_effective_founders_lacy() at Mon Apr 19 15:28:53 2004
============================================================
animals:        15
founders:       3
descendants:    12
f_e:            7.205
============================================================
        Calling a_effective_founders_boichard() at Mon Apr 19 15:28:53 2004
============================================================
animals:        15
founders:       3
descendants:    12
f_e:            5.856
============================================================
        Calling a_effective_ancestors_definite() at Mon Apr 19 15:28:53 2004
============================================================
animals:        15
founders:       0
descendants:    15
f_a:            0.000
============================================================
        Calling a_effective_ancestors_indefinite() at Mon Apr 19 15:28:53 2004
------------------------------------------------------------
WARNING: (pyp_metrics/a_effective_ancestors_indefinite()): Setting n (10) to be equal to the actual number of founders (0) in the pedigree!
============================================================
animals:        15
founders:       0
descendants:    15
f_l:            0.000
f_u:            1.000
============================================================
        Calling related_animals() at Mon Apr 19 15:28:53 2004
[15, 13, 7, 3, 4, 1, 2, 12, 9, 6, 11, 8, 5, 14, 10]
        Calling related_animals() at Mon Apr 19 15:28:53 2004
[10, 7, 3, 4, 1, 2]
        Calling common_ancestors() at Mon Apr 19 15:28:53 2004
[1, 2, 3, 4, 7, 10]
Stopping pypedal.py at Mon Apr 19 15:28:53 2004