Tag Buchfink11Specialization for ReducedAminoAcid#
Specialization for ReducedAminoAcid#
Defined in | seqan/reduced_aminoacid.h |
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Signature |
typedef Buchfink11 Tag<Buchfink11_>;
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Detailed Description
This is the 11-character reduction defined by Buchfink et al, 2014, https://www.ncbi.nlm.nih.gov/pubmed/25402007
This alphabet is used by tool Diamond.
Since it was created from the 20-letter alphabet the clusters in SeqAn are not identical (they contain more symbols). This is the clustering:
'A', // A S T X 'B', // B D E K N O Q R Z 'C', // C U 'F', // F * 'G', // G 'H', // H 'I', // I J L V 'M', // M 'P', // P 'W', // W 'Y' // Y