// Copyright (c) 2009 INRIA Sophia-Antipolis (France).
// All rights reserved.
//
// This file is part of CGAL (www.cgal.org).
//
// $URL: https://github.com/CGAL/cgal/blob/v5.6.1/Mesh_3/include/CGAL/refine_mesh_3.h $
// $Id: refine_mesh_3.h e249f59 2023-02-20T14:38:38+01:00 Sébastien Loriot
// SPDX-License-Identifier: GPL-3.0-or-later OR LicenseRef-Commercial
//
//
// Author(s)     : Stephane Tayeb
//
//******************************************************************************
// File Description : refine_mesh_3 function declaration and implementation.
//******************************************************************************

#ifndef CGAL_REFINE_MESH_3_H
#define CGAL_REFINE_MESH_3_H

#include <CGAL/license/Mesh_3.h>

#include <CGAL/config.h>
#include <CGAL/Mesh_3/config.h>
#include <CGAL/Mesh_3/Mesher_3.h>
#include <CGAL/Mesh_error_code.h>
#include <CGAL/optimize_mesh_3.h>
#include <CGAL/SMDS_3/Dump_c3t3.h>
#include <CGAL/Named_function_parameters.h>
#include <CGAL/Mesh_3/parameters.h>

#include <atomic>

namespace CGAL {

namespace details {

/*
 * @class Insert_vertex_in_c3t3
 *
 * A functor designed to insert unweighted points into the triangulation
 * of a C3T3 from C3T3::Tr::Vertex , keeping the dimension and indices.
 */
template <typename C3T3>
class Insert_vertex_in_c3t3
{
private:
  typedef typename C3T3::Vertex_handle          Vertex_handle;
  typedef typename C3T3::Index                  Index;

  typedef typename C3T3::Triangulation          Tr;
  typedef typename Tr::Geom_traits              Geom_traits;
  typedef typename Tr::Vertex                   Vertex;
  typedef typename Tr::Weighted_point           Weighted_point;
  typedef typename Weighted_point::Weight       Weight;

public:
  Insert_vertex_in_c3t3(C3T3& c3t3)
    : r_c3t3_(c3t3) {}

  void operator()(const Vertex& vertex) const
  {
    typename Geom_traits::Construct_point_3 cp =
        r_c3t3_.triangulation().geom_traits().construct_point_3_object();
    typename Geom_traits::Compute_weight_3 cw =
        r_c3t3_.triangulation().geom_traits().compute_weight_3_object();

    // Get vh properties
    int dimension = vertex.in_dimension();
    Weight w = (dimension < 2) ? cw(vertex.point()) : 0;
    Weighted_point point(cp(vertex.point()), w);
    Index index = vertex.index();

    // Insert point and restore handle properties
    Vertex_handle new_vertex = r_c3t3_.triangulation().insert(point);
    r_c3t3_.set_index(new_vertex, index);
    r_c3t3_.set_dimension(new_vertex, dimension);

#if defined(CGAL_LINKED_WITH_TBB)\
&& !defined(CGAL_PARALLEL_MESH_3_DO_NOT_ADD_OUTSIDE_POINTS_ON_A_FAR_SPHERE)
    if (boost::is_convertible<typename C3T3::Concurrency_tag, CGAL::Parallel_tag>::value)
    {
      if (dimension == -1)
        r_c3t3_.add_far_point(new_vertex);
    }
#endif
#ifdef CGAL_SEQUENTIAL_MESH_3_ADD_OUTSIDE_POINTS_ON_A_FAR_SPHERE
    if (boost::is_convertible<typename C3T3::Concurrency_tag, CGAL::Sequential_tag>::value)
    {
      if (dimension == -1)
        r_c3t3_.add_far_point(new_vertex);
    }
#endif
  }

private:
  C3T3& r_c3t3_;
};

} // namespace details

/*!
 * \ingroup PkgMesh3Functions
 *
 * The function `refine_mesh_3()` is a 3D
 * mesh generator. It produces simplicial meshes which discretize
 * 3D domains.
 *
 * The mesh generation algorithm is a Delaunay refinement process
 * followed by an optimization phase.
 * The criteria driving the Delaunay refinement
 * process may be tuned to achieve the user needs with respect to
 * the size of mesh elements, the accuracy of boundaries approximation,
 * etc.
 *
 * The optimization phase is a sequence of optimization processes,
 * amongst the following available optimizers: an ODT smoothing,
 * a Lloyd smoothing, a sliver perturber, and a sliver exuder.
 * Each optimization process
 * can be activated or not,
 * according to the user requirements
 * and available time.
 * By default, only the perturber and the exuder are activated.
 * Note that the benefits of the exuder will be lost if the mesh
 * is further refined afterward.
 *
 * \attention The function template `refine_mesh_3()` may be used to refine a previously
 * computed mesh, e.g.:
 * \code{.cpp}
 * C3T3 c3t3 = CGAL::make_mesh_3<C3T3>(domain,criteria);
 *
 * CGAL::refine_mesh_3(c3t3, domain, new_criteria);
 * \endcode
 *
 * Please note that we guarantee the result if and only if the domain does
 * not change from one refinement to the next one.
 *
 *
 * \tparam C3T3 either a model of the concept `MeshComplex_3InTriangulation_3` or
 *              of `MeshComplexWithFeatures_3InTriangulation_3` if `MD`
 *              is a model of `MeshDomainWithFeatures_3`.
 *              The type `C3T3` is in particular required to provide a nested type
 *              `C3T3::Triangulation` for the 3D triangulation
 *              embedding the mesh. The vertex and cell base classes of the
 *              triangulation `C3T3::Triangulation` are required to be models of the
 *              concepts `MeshVertexBase_3` and `MeshCellBase_3` respectively.
 *
 * \tparam MD either a model of the concept `MeshDomain_3` or of
 *            `MeshDomainWithFeatures_3` if 0 and 1-dimensional features
 *            of the input complex have to be accurately represented in the mesh.
 *
 * \tparam MC either a model of the concept `MeshCriteria_3` or a model
 *            of `MeshCriteriaWithFeatures_3` if the domain has exposed features.
 *
 * \tparam NamedParameters a sequence of \ref bgl_namedparameters "Named Parameters
 *
 * \param c3t3 the mesh to be refined that is modified by the refinement process.
 *             As the refinement process only adds points to the triangulation, all
 *             vertices of the triangulation of `c3t3` remain in the
 *             mesh during the refinement process. `c3t3` can be used to insert
 *             specific points in the domain to ensure that they will be contained in the
 *             final triangulation.
 * \param domain the domain used to create the `c3t3` parameter. It is the sole link through which the domain
 *               to be discretized is known by the mesh generation algorithm.
 * \param criteria specifies the size and shape requirements for mesh tetrahedra
 *                 and surface facets. These criteria form the rules which drive
 *                 the refinement process. All mesh elements satisfy those criteria
 *                 at the end of the refinement process.
 *                 In addition, if the domain has features, the argument
 *                 `criteria` provides a sizing field to guide the discretization
 *                 of 1-dimensional exposed features.
 * \param np an optional sequence of \ref bgl_namedparameters "Named Parameters" among the ones listed below.
 *           They control which optimization processes are performed
 *           and allow the user to tune the parameters of the optimization processes.
 *           Individual optimization parameters are not described here as they are
 *           internal types (see instead the documentation page of each optimizer).
 *           For each optimization algorithm, there exist two global functions
 *           that allow to enable or disable the optimizer.
 *
 * \cgalNamedParamsBegin
 *   \cgalParamSectionBegin{Topological options (manifoldness)}
 *     \cgalParamDescription{In order to drive the meshing algorithm and ensure that the output mesh follows a desired topological criterion,
 *                           three named parameters control this option:
 *                           <UL>
 *                             <LI>`parameters::manifold()`
 *                             <LI>`parameters::manifold_with_boundary()`
 *                             <LI>`parameters::non_manifold()`
 *                           </UL>
 *                           Note that the meshing algorithm cannot generate a manifold surface if the input surface is not manifold.}
 *     \cgalParamDefault{`parameters::non_manifold()`}
 *   \cgalParamSectionEnd
 *   \cgalParamSectionBegin{Lloyd optimization}
 *     \cgalParamDescription{`lloyd_optimize_mesh_3()` can optionally be called after the meshing process.
 *                           Two named parameters control this behavior:
 *                           <UL>
 *                             <LI> `parameters::no_lloyd()`
 *                             <LI> `parameters::lloyd_optimize_mesh_3()`
 *                           </UL>}
 *     \cgalParamDefault{`parameters::no_lloyd()`}
 *   \cgalParamSectionEnd
 *   \cgalParamSectionBegin{ODT optimization}
 *     \cgalParamDescription{`odt_optimize_mesh_3()` can optionally be called after the meshing process.
 *                           Two named parameters control this behavior:
 *                           <UL>
 *                             <LI> `parameters::no_odt()`
 *                             <LI> `parameters::odt()`
 *                           </UL>}
 *     \cgalParamDefault{`parameters::no_odt()`}
 *   \cgalParamSectionEnd
 *   \cgalParamSectionBegin{Mesh perturbation}
 *     \cgalParamDescription{`perturb_mesh_3()` can optionally be called after the meshing process.
 *                           Two named parameters control this behavior:
 *                           <UL>
 *                             <LI> `parameters::no_perturb()`
 *                             <LI> `parameters::perturb()`
 *                           </UL>}
 *     \cgalParamDefault{`parameters::perturb()`}
 *   \cgalParamSectionEnd
 *   \cgalParamSectionBegin{Mesh exudation}
 *     \cgalParamDescription{`exude_mesh_3()` can optionally be called after the meshing process.
 *                           Two named parameters control this behavior:
 *                           <UL>
 *                             <LI> `parameters::exude()`
 *                             <LI> `parameters::no_exude()`
 *                           </UL>}
 *     \cgalParamDefault{`parameters::exude()`}
 *   \cgalParamSectionEnd
 * \cgalNamedParamsEnd
 *
 * The optimization parameters can be passed in arbitrary order. If one parameter
 * is not passed, its default value is used. The default values are
 * `no_lloyd()`, `no_odt()`, `perturb()` and `exude()`.
 * Note that regardless of which optimization processes are activated,
 * they are always launched in the order that is a suborder
 * of the following (see user manual for further
 * details): *ODT-smoother*, *Lloyd-smoother*, *perturber*, and *exuder*.
 *
 * Beware that optimization of the mesh is obtained
 * by perturbing mesh vertices and modifying the mesh connectivity
 * and that this has an impact
 * on the strict compliance to the refinement criteria.
 * Though a strict compliance to mesh criteria
 * is guaranteed at the end of the Delaunay refinement, this may no longer be true after
 * some optimization processes. Also beware that the default behavior does involve some
 * optimization processes.
 *
 * \sa `CGAL::make_mesh_3()`
 * \sa `CGAL::parameters::manifold()`
 * \sa `CGAL::parameters::manifold_with_boundary()`
 * \sa `CGAL::parameters::non_manifold()`
 * \sa `CGAL::exude_mesh_3()`
 * \sa `CGAL::perturb_mesh_3()`
 * \sa `CGAL::lloyd_optimize_mesh_3()`
 * \sa `CGAL::odt_optimize_mesh_3()`
 * \sa `CGAL::parameters::exude()`
 * \sa `CGAL::parameters::no_exude()`
 * \sa `CGAL::parameters::perturb()`
 * \sa `CGAL::parameters::no_perturb()`
 * \sa `CGAL::parameters::lloyd()`
 * \sa `CGAL::parameters::no_lloyd()`
 * \sa `CGAL::parameters::odt()`
 * \sa `CGAL::parameters::no_odt()`
 */
template<typename C3T3, typename MeshDomain, typename MeshCriteria, typename CGAL_NP_TEMPLATE_PARAMETERS>
void refine_mesh_3(C3T3& c3t3, const MeshDomain& domain, const MeshCriteria& criteria, const CGAL_NP_CLASS& np = parameters::default_values())
{
    using parameters::choose_parameter;
    using parameters::get_parameter;
    parameters::internal::Exude_options exude_param = choose_parameter(get_parameter(np, internal_np::exude_options_param), parameters::exude().v);
    parameters::internal::Perturb_options perturb_param = choose_parameter(get_parameter(np, internal_np::perturb_options_param), parameters::perturb().v);
    parameters::internal::Odt_options odt_param = choose_parameter(get_parameter(np, internal_np::odt_options_param), parameters::no_odt().v);
    parameters::internal::Lloyd_options lloyd_param = choose_parameter(get_parameter(np, internal_np::lloyd_options_param), parameters::no_lloyd().v);
    bool reset = choose_parameter(get_parameter(np, internal_np::do_reset_c3t3), false);
    parameters::internal::Mesh_3_options mesh_options_param = choose_parameter(get_parameter(np, internal_np::mesh_param), parameters::internal::Mesh_3_options());
    parameters::internal::Manifold_options manifold_options_param = choose_parameter(get_parameter(np, internal_np::manifold_param), parameters::internal::Manifold_options());

    return refine_mesh_3_impl(c3t3,
                              domain,
                              criteria,
                              exude_param,
                              perturb_param,
                              odt_param,
                              lloyd_param,
                              reset,
                              mesh_options_param,
                              manifold_options_param);
}

#ifndef DOXYGEN_RUNNING
// Overload handling parameters passed with operator=
template<typename C3T3, typename MeshDomain, typename MeshCriteria,
         typename CGAL_NP_TEMPLATE_PARAMETERS_NO_DEFAULT_1,
         typename CGAL_NP_TEMPLATE_PARAMETERS_NO_DEFAULT_2,
         typename ... NP>
void refine_mesh_3(C3T3& c3t3, const MeshDomain& domain, const MeshCriteria& criteria,
                   const CGAL_NP_CLASS_1&  np1,
                   const CGAL_NP_CLASS_2&  np2,
                   const NP& ... nps)
{
  return refine_mesh_3(c3t3, domain, criteria, internal_np::combine_named_parameters(np1, np2, nps...));
}
/**
 * @brief This function refines the mesh c3t3 wrt domain & criteria
 *
 * @param c3t3 the mesh to be refined.
 * @param domain the domain used to be discretized
 * @param criteria the criteria
 * @param exude if `true`, an exudation step will be done at
 *   the end of the Delaunay refinement process
 * @param perturb if `true`, an explicit vertex perturbation step will be
 *   done at the end of refinement process
 * @param reset_c3t3 if `true`, a new C3T3 will be construct from param c3t3.
 *   The new c3t3 keeps only the vertices (as NON-weighted points with their
 *   dimension and Index) of the triangulation. That allows to refine a mesh
 *   which has been exuded.
 * @param mesh_3_options is a struct object used to pass non-documented options,
 *   for debugging purpose.
 */
template<class C3T3, class MeshDomain, class MeshCriteria>
void refine_mesh_3_impl(C3T3& c3t3,
                        const MeshDomain&   domain,
                        const MeshCriteria& criteria,
                        const parameters::internal::Exude_options& exude,
                        const parameters::internal::Perturb_options& perturb,
                        const parameters::internal::Odt_options& odt,
                        const parameters::internal::Lloyd_options& lloyd,
                        bool reset_c3t3,
                        const parameters::internal::Mesh_3_options&
                          mesh_options = parameters::internal::Mesh_3_options(),
                        const parameters::internal::Manifold_options&
                          manifold_options = parameters::internal::Manifold_options())
{
  // Note: this function is almost entirely copied in refine_periodic_3_mesh.h
  // and any change to this function should likely be ported to the periodic version.

  typedef Mesh_3::Mesher_3<C3T3, MeshCriteria, MeshDomain> Mesher;

  // Reset c3t3 (i.e. remove weights) if needed
  if ( reset_c3t3 )
  {
    C3T3 tmp_c3t3;
    std::for_each(c3t3.triangulation().finite_vertices_begin(),
                  c3t3.triangulation().finite_vertices_end(),
                  details::Insert_vertex_in_c3t3<C3T3>(tmp_c3t3));
    // TODO: corners and edges are not restored
    c3t3.swap(tmp_c3t3);
  }

  dump_c3t3(c3t3, mesh_options.dump_after_init_prefix);

  // Build mesher and launch refinement process
  Mesher mesher (c3t3, domain, criteria, manifold_options.mesh_topology,
                 mesh_options.maximal_number_of_vertices,
                 mesh_options.pointer_to_error_code
#ifndef CGAL_NO_ATOMIC
                 , mesh_options.pointer_to_stop_atomic_boolean
#endif
                 );
  double refine_time = mesher.refine_mesh(mesh_options.dump_after_refine_surface_prefix);
  c3t3.clear_manifold_info();

  dump_c3t3(c3t3, mesh_options.dump_after_refine_prefix);

  // Odt
  if ( odt )
  {
    odt_optimize_mesh_3(c3t3,
                        domain,
                        parameters::time_limit = odt.time_limit(),
                        parameters::max_iteration_number = odt.max_iteration_number(),
                        parameters::convergence = odt.convergence(),
                        parameters::freeze_bound = odt.bound());
  }

  // Lloyd
  if ( lloyd )
  {
    lloyd_optimize_mesh_3(c3t3,
                          domain,
                          parameters::time_limit = lloyd.time_limit(),
                          parameters::max_iteration_number = lloyd.max_iteration_number(),
                          parameters::convergence = lloyd.convergence(),
                          parameters::freeze_bound = lloyd.bound());
  }

  if( odt || lloyd) {
    dump_c3t3(c3t3, mesh_options.dump_after_glob_opt_prefix);
  }

  // Perturbation
  if ( perturb )
  {
    double perturb_time_limit = refine_time;

    if ( perturb.is_time_limit_set() )
      perturb_time_limit = perturb.time_limit();

    perturb_mesh_3(c3t3,
                   domain,
                   parameters::time_limit = perturb_time_limit,
                   parameters::sliver_bound = perturb.bound());

    dump_c3t3(c3t3, mesh_options.dump_after_perturb_prefix);
  }

  // Exudation
  if ( exude )
  {
    double exude_time_limit = refine_time;

    if ( exude.is_time_limit_set() )
      exude_time_limit = exude.time_limit();

    exude_mesh_3(c3t3,
                 parameters::time_limit = exude_time_limit,
                 parameters::sliver_bound = exude.bound());

    dump_c3t3(c3t3, mesh_options.dump_after_exude_prefix);
  }
}
#endif // DOXYGEN_RUNNING
} // end namespace CGAL

#endif // CGAL_REFINE_MESH_3_H

