- a -
- b -
- backwardBase()
: Kmer
- BackwardCDBG()
: BackwardCDBG< Unitig_data_t, Graph_data_t, is_const >
- begin()
: BackwardCDBG< Unitig_data_t, Graph_data_t, is_const >
, CompactedDBG< Unitig_data_t, Graph_data_t >
, ForwardCDBG< Unitig_data_t, Graph_data_t, is_const >
, UnitigColors
- build()
: CompactedDBG< Unitig_data_t, Graph_data_t >
- buildColors()
: ColoredCDBG< Unitig_data_t >
- buildGraph()
: ColoredCDBG< Unitig_data_t >
- c -
- clear()
: CCDBG_Data_t< Unitig_data_t >
, CDBG_Data_t< Unitig_data_t, Graph_data_t >
, ColoredCDBG< Unitig_data_t >
, CompactedDBG< Unitig_data_t, Graph_data_t >
, DataAccessor< Unitig_data_t >
, UnitigColors
- ColoredCDBG()
: ColoredCDBG< Unitig_data_t >
- colorMax()
: UnitigColors
- CompactedDBG()
: CompactedDBG< Unitig_data_t, Graph_data_t >
- concat()
: CCDBG_Data_t< Unitig_data_t >
, CDBG_Data_t< Unitig_data_t, Graph_data_t >
, DataAccessor< Unitig_data_t >
- contains()
: UnitigColors
- d -
- e -
- end()
: BackwardCDBG< Unitig_data_t, Graph_data_t, is_const >
, CompactedDBG< Unitig_data_t, Graph_data_t >
, ForwardCDBG< Unitig_data_t, Graph_data_t, is_const >
, UnitigColors
- extract()
: CCDBG_Data_t< Unitig_data_t >
, CDBG_Data_t< Unitig_data_t, Graph_data_t >
, DataAccessor< Unitig_data_t >
- f -
- g -
- getChar()
: Kmer
- getColorID()
: UnitigColors::UnitigColors_const_iterator
- getColorName()
: ColoredCDBG< Unitig_data_t >
- getColorNames()
: ColoredCDBG< Unitig_data_t >
- getData()
: CompactedDBG< Unitig_data_t, Graph_data_t >
, DataAccessor< Unitig_data_t >
, Unitig< T >
, UnitigMap< Unitig_data_t, Graph_data_t, is_const >
- getGraph()
: UnitigMap< Unitig_data_t, Graph_data_t, is_const >
- getK()
: CompactedDBG< Unitig_data_t, Graph_data_t >
- getKmerMapping()
: UnitigMap< Unitig_data_t, Graph_data_t, is_const >
- getKmerPosition()
: UnitigColors::UnitigColors_const_iterator
- getMappedHead()
: UnitigMap< Unitig_data_t, Graph_data_t, is_const >
- getMappedKmer()
: UnitigMap< Unitig_data_t, Graph_data_t, is_const >
- getMappedTail()
: UnitigMap< Unitig_data_t, Graph_data_t, is_const >
- getNbColors()
: ColoredCDBG< Unitig_data_t >
- getPredecessors()
: UnitigMap< Unitig_data_t, Graph_data_t, is_const >
- getSizeInBytes()
: UnitigColors
- getSubUnitigColorNames()
: DataAccessor< Unitig_data_t >
- getSubUnitigColors()
: DataAccessor< Unitig_data_t >
- getSuccessors()
: UnitigMap< Unitig_data_t, Graph_data_t, is_const >
- getUnitigColors()
: DataAccessor< Unitig_data_t >
- getUnitigHead()
: UnitigMap< Unitig_data_t, Graph_data_t, is_const >
- getUnitigKmer()
: UnitigMap< Unitig_data_t, Graph_data_t, is_const >
- getUnitigTail()
: UnitigMap< Unitig_data_t, Graph_data_t, is_const >
- h -
- i -
- k -
- l -
- m -
- n -
- o -
- operator!=()
: ColoredCDBG< Unitig_data_t >
, CompactedDBG< Unitig_data_t, Graph_data_t >
, Kmer
, neighborIterator< Unitig_data_t, Graph_data_t, is_const >
, UnitigColors::UnitigColors_const_iterator
, unitigIterator< Unitig_data_t, Graph_data_t, is_const >
, UnitigMap< Unitig_data_t, Graph_data_t, is_const >
, UnitigMapBase
- operator*()
: neighborIterator< Unitig_data_t, Graph_data_t, is_const >
, UnitigColors::UnitigColors_const_iterator
, unitigIterator< Unitig_data_t, Graph_data_t, is_const >
- operator++()
: neighborIterator< Unitig_data_t, Graph_data_t, is_const >
, UnitigColors::UnitigColors_const_iterator
, unitigIterator< Unitig_data_t, Graph_data_t, is_const >
- operator+=()
: ColoredCDBG< Unitig_data_t >
, CompactedDBG< Unitig_data_t, Graph_data_t >
- operator->()
: neighborIterator< Unitig_data_t, Graph_data_t, is_const >
, unitigIterator< Unitig_data_t, Graph_data_t, is_const >
- operator=()
: ColoredCDBG< Unitig_data_t >
, CompactedDBG< Unitig_data_t, Graph_data_t >
, Kmer
, UnitigColors
, UnitigColors::UnitigColors_const_iterator
- operator==()
: ColoredCDBG< Unitig_data_t >
, CompactedDBG< Unitig_data_t, Graph_data_t >
, Kmer
, neighborIterator< Unitig_data_t, Graph_data_t, is_const >
, UnitigColors::UnitigColors_const_iterator
, unitigIterator< Unitig_data_t, Graph_data_t, is_const >
, UnitigMap< Unitig_data_t, Graph_data_t, is_const >
, UnitigMapBase
- optimizeFullColors()
: UnitigColors
- r -
- s -
- t -
- u -
- w -
- ~ -